[metrics-bugs] #26035 [Metrics/Statistics]: Streamline sample quantile types used in the various modules
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Mon May 7 14:43:47 UTC 2018
#26035: Streamline sample quantile types used in the various modules
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Reporter: karsten | Owner: metrics-team
Type: enhancement | Status: new
Priority: Medium | Milestone:
Component: Metrics/Statistics | Version:
Severity: Normal | Keywords:
Actual Points: | Parent ID:
Points: | Reviewer:
Sponsor: Sponsor13 |
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While documenting how to reproduce our various statistics, I noticed that
we're using different methods/formulas for computing sample quantiles,
that is, the median, quartiles, percentiles, and so on. Ideally, we would
settle on one method and use that everywhere. The benefit is easier
documentation and reproducibility.
Here is a (probably still incomplete) list of graphs for which we
calculate quantiles (with the tool written in parentheses):
- [https://metrics.torproject.org/userstats-relay-country.html Relay
users]: Median and inter-quartile range of ratios in censorship detector
(Python, possibly Java soon)
- [https://metrics.torproject.org/advbwdist-perc.html Advertised
bandwidth distribution]: Percentiles, including the unusual 0-th
percentile (Java) and median (R)
- [https://metrics.torproject.org/advbwdist-relay.html Advertised
bandwidth of n-th fastest relays]: Median (R)
- [https://metrics.torproject.org/connbidirect.html Fraction of
connections used uni-/bidirectionally]: Quartiles (Java)
- [https://metrics.torproject.org/torperf.html Time to download files
over Tor]: Quartiles (PostgreSQL)
- [https://metrics.torproject.org/hidserv-dir-onions-seen.html Unique
.onion addresses (version 2 only)]: Quartiles for weighted inter-quartile
mean (Java)
- [https://metrics.torproject.org/hidserv-rend-relayed-cells.html Onion-
service traffic (versions 2 and 3)]: Quartiles for weighted inter-quartile
mean (Java)
There exist surprisingly many ways for computing quantiles. I found the
following links to be quite helpful:
-
https://en.wikipedia.org/wiki/Quantile#Estimating_quantiles_from_a_sample
-
https://www.rdocumentation.org/packages/stats/versions/3.5.0/topics/quantile
Looking at the lists, we should probably pick two types: one discontinuous
(`R-1` to `R-3`) and one continuous type (`R-4` to `R-9`). And ideally,
we'd pick types that are either the defaults in the tools we're using or
that we can easily select to use in those tools.
Going through our tools:
- PostgreSQL has two functions, `PERCENTILE_CONT` and `PERCENTILE_DISC`,
of which we already use the first. I did some experiments with a quite
large sample set and found that `PERCENTILE_CONT` produces the exact same
output as `R-7` and `PERCENTILE_DISC` must be either `R-1` or `R-2`. A
math person might be able to say whether it's `R-1` or `R-2` by looking at
the PostgreSQL source code. And maybe that person would be able to confirm
the `R-7` part, too. It seems like we don't have the choice of using other
types than these in PosrtgreSQL, though, or at least not easily.
- R has support for all nine types. After all, they're named after this
language. It seems like `R-7` is the default type.
- Java with Apache Commons Math has support for all nine types, `R-1` to
`R-9`. And in theory, the two types we need shouldn't be terribly hard to
re-implement, in case we want to avoid putting in this not-exactly-tiny
library as dependency.
- Python with SciPy/Numpy probably has support for some types, but I
guess we're not planning to keep our Python code anyway, so this doesn't
really matter.
Whee, long ticket. Thoughts?
--
Ticket URL: <https://trac.torproject.org/projects/tor/ticket/26035>
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